opn3 protein (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

opn3

Opsin 3. (388 aa)

Predicted Functional Partners:

eif2b2

0.970

eif2b3

0.955

eif2b4

0.949

eif2b5

0.935

LOC110947263

0.830

LOC110960642

0.830

LOC110969136

0.830

LOC110967863

0.830

LOC110963819

0.747

LOC110965180

0.744

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110947263	LOC110963819	ENSAPOP00000000845	ENSAPOP00000014823	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	Retinal G protein coupled receptor a.	0.675
LOC110947263	LOC110965180	ENSAPOP00000000845	ENSAPOP00000008313	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.980
LOC110947263	opn3	ENSAPOP00000000845	ENSAPOP00000002428	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	Opsin 3.	0.830
LOC110960642	LOC110963819	ENSAPOP00000001231	ENSAPOP00000014823	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Retinal G protein coupled receptor a.	0.675
LOC110960642	LOC110965180	ENSAPOP00000001231	ENSAPOP00000008313	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.986
LOC110960642	LOC110969136	ENSAPOP00000001231	ENSAPOP00000016468	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Guanine nucleotide binding protein (G protein), beta polypeptide 1a.	0.865
LOC110960642	opn3	ENSAPOP00000001231	ENSAPOP00000002428	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Opsin 3.	0.830
LOC110963819	LOC110947263	ENSAPOP00000014823	ENSAPOP00000000845	Retinal G protein coupled receptor a.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.675
LOC110963819	LOC110960642	ENSAPOP00000014823	ENSAPOP00000001231	Retinal G protein coupled receptor a.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.675
LOC110963819	LOC110965180	ENSAPOP00000014823	ENSAPOP00000008313	Retinal G protein coupled receptor a.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.741
LOC110963819	LOC110967863	ENSAPOP00000014823	ENSAPOP00000032163	Retinal G protein coupled receptor a.	WD_REPEATS_REGION domain-containing protein.	0.675
LOC110963819	LOC110969136	ENSAPOP00000014823	ENSAPOP00000016468	Retinal G protein coupled receptor a.	Guanine nucleotide binding protein (G protein), beta polypeptide 1a.	0.675
LOC110963819	opn3	ENSAPOP00000014823	ENSAPOP00000002428	Retinal G protein coupled receptor a.	Opsin 3.	0.747
LOC110965180	LOC110947263	ENSAPOP00000008313	ENSAPOP00000000845	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.980
LOC110965180	LOC110960642	ENSAPOP00000008313	ENSAPOP00000001231	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.986
LOC110965180	LOC110963819	ENSAPOP00000008313	ENSAPOP00000014823	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Retinal G protein coupled receptor a.	0.741
LOC110965180	LOC110967863	ENSAPOP00000008313	ENSAPOP00000032163	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	WD_REPEATS_REGION domain-containing protein.	0.980
LOC110965180	LOC110969136	ENSAPOP00000008313	ENSAPOP00000016468	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 1a.	0.986
LOC110965180	opn3	ENSAPOP00000008313	ENSAPOP00000002428	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Opsin 3.	0.744
LOC110967863	LOC110963819	ENSAPOP00000032163	ENSAPOP00000014823	WD_REPEATS_REGION domain-containing protein.	Retinal G protein coupled receptor a.	0.675