LOC110967680 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC110967680

CDC42 effector protein (Rho GTPase binding) 3. (359 aa)

Predicted Functional Partners:

ENSAPOP00000024705

0.798

rhoq

0.798

ENSAPOP00000013390

0.767

mapkapk5

0.607

CDC42

0.556

skp1

0.556

LOC110951271

0.556

rasl11b

0.547

ENSAPOP00000005758

0.545

LOC110966235

0.545

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	ENSAPOP00000005758	ENSAPOP00000007597	ENSAPOP00000005758	Cell division cycle 42.	Ras homolog gene family, member Gd.	0.659
CDC42	ENSAPOP00000013390	ENSAPOP00000007597	ENSAPOP00000013390	Cell division cycle 42.	CDC42 effector protein (Rho GTPase binding) 5.	0.797
CDC42	ENSAPOP00000024705	ENSAPOP00000007597	ENSAPOP00000024705	Cell division cycle 42.	Ras homolog family member H.	0.632
CDC42	LOC110966235	ENSAPOP00000007597	ENSAPOP00000011112	Cell division cycle 42.	Cell division cycle 42, like.	0.772
CDC42	LOC110967680	ENSAPOP00000007597	ENSAPOP00000002452	Cell division cycle 42.	CDC42 effector protein (Rho GTPase binding) 3.	0.556
CDC42	rasl11b	ENSAPOP00000007597	ENSAPOP00000017577	Cell division cycle 42.	RAS-like, family 11, member B.	0.460
CDC42	rhoq	ENSAPOP00000007597	ENSAPOP00000025867	Cell division cycle 42.	Ras homolog family member Q.	0.631
CDC42	skp1	ENSAPOP00000007597	ENSAPOP00000016367	Cell division cycle 42.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.470
ENSAPOP00000005758	CDC42	ENSAPOP00000005758	ENSAPOP00000007597	Ras homolog gene family, member Gd.	Cell division cycle 42.	0.659
ENSAPOP00000005758	ENSAPOP00000013390	ENSAPOP00000005758	ENSAPOP00000013390	Ras homolog gene family, member Gd.	CDC42 effector protein (Rho GTPase binding) 5.	0.479
ENSAPOP00000005758	ENSAPOP00000024705	ENSAPOP00000005758	ENSAPOP00000024705	Ras homolog gene family, member Gd.	Ras homolog family member H.	0.506
ENSAPOP00000005758	LOC110951271	ENSAPOP00000005758	ENSAPOP00000034651	Ras homolog gene family, member Gd.	Cell division cycle 42.	0.659
ENSAPOP00000005758	LOC110966235	ENSAPOP00000005758	ENSAPOP00000011112	Ras homolog gene family, member Gd.	Cell division cycle 42, like.	0.588
ENSAPOP00000005758	LOC110967680	ENSAPOP00000005758	ENSAPOP00000002452	Ras homolog gene family, member Gd.	CDC42 effector protein (Rho GTPase binding) 3.	0.545
ENSAPOP00000005758	rasl11b	ENSAPOP00000005758	ENSAPOP00000017577	Ras homolog gene family, member Gd.	RAS-like, family 11, member B.	0.460
ENSAPOP00000005758	rhoq	ENSAPOP00000005758	ENSAPOP00000025867	Ras homolog gene family, member Gd.	Ras homolog family member Q.	0.505
ENSAPOP00000013390	CDC42	ENSAPOP00000013390	ENSAPOP00000007597	CDC42 effector protein (Rho GTPase binding) 5.	Cell division cycle 42.	0.797
ENSAPOP00000013390	ENSAPOP00000005758	ENSAPOP00000013390	ENSAPOP00000005758	CDC42 effector protein (Rho GTPase binding) 5.	Ras homolog gene family, member Gd.	0.479
ENSAPOP00000013390	ENSAPOP00000024705	ENSAPOP00000013390	ENSAPOP00000024705	CDC42 effector protein (Rho GTPase binding) 5.	Ras homolog family member H.	0.557
ENSAPOP00000013390	LOC110951271	ENSAPOP00000013390	ENSAPOP00000034651	CDC42 effector protein (Rho GTPase binding) 5.	Cell division cycle 42.	0.797