neurod1 protein (Acanthochromis polyacanthus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

neurod1

Neurogenic differentiation factor. (354 aa)

Predicted Functional Partners:

atf3

0.885

LOC110970525

0.826

pcna

0.804

LOC110950077

0.733

LOC110951614

0.733

dcx

0.716

elavl3

0.692

rfx6

0.687

LOC110966742

0.675

LOC110949229

0.675

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110949229	atf3	ENSAPOP00000023367	ENSAPOP00000020376	Transcription factor 3b.	Activating transcription factor 3.	0.452
LOC110949229	neurod1	ENSAPOP00000023367	ENSAPOP00000002632	Transcription factor 3b.	Neurogenic differentiation factor.	0.675
LOC110950077	LOC110966742	ENSAPOP00000020919	ENSAPOP00000015920	NK2 homeobox 2a.	NK6 homeobox 1.	0.541
LOC110950077	elavl3	ENSAPOP00000020919	ENSAPOP00000014650	NK2 homeobox 2a.	ELAV-like protein; Belongs to the RRM elav family.	0.584
LOC110950077	neurod1	ENSAPOP00000020919	ENSAPOP00000002632	NK2 homeobox 2a.	Neurogenic differentiation factor.	0.733
LOC110950077	rfx6	ENSAPOP00000020919	ENSAPOP00000003631	NK2 homeobox 2a.	Regulatory factor X, 6.	0.509
LOC110951614	LOC110966742	ENSAPOP00000026209	ENSAPOP00000015920	NK2 homeobox 2b.	NK6 homeobox 1.	0.541
LOC110951614	elavl3	ENSAPOP00000026209	ENSAPOP00000014650	NK2 homeobox 2b.	ELAV-like protein; Belongs to the RRM elav family.	0.584
LOC110951614	neurod1	ENSAPOP00000026209	ENSAPOP00000002632	NK2 homeobox 2b.	Neurogenic differentiation factor.	0.733
LOC110951614	rfx6	ENSAPOP00000026209	ENSAPOP00000003631	NK2 homeobox 2b.	Regulatory factor X, 6.	0.509
LOC110966742	LOC110950077	ENSAPOP00000015920	ENSAPOP00000020919	NK6 homeobox 1.	NK2 homeobox 2a.	0.541
LOC110966742	LOC110951614	ENSAPOP00000015920	ENSAPOP00000026209	NK6 homeobox 1.	NK2 homeobox 2b.	0.541
LOC110966742	neurod1	ENSAPOP00000015920	ENSAPOP00000002632	NK6 homeobox 1.	Neurogenic differentiation factor.	0.675
LOC110966742	rfx6	ENSAPOP00000015920	ENSAPOP00000003631	NK6 homeobox 1.	Regulatory factor X, 6.	0.582
LOC110970525	neurod1	ENSAPOP00000027942	ENSAPOP00000002632	Hairy-related 12.	Neurogenic differentiation factor.	0.826
atf3	LOC110949229	ENSAPOP00000020376	ENSAPOP00000023367	Activating transcription factor 3.	Transcription factor 3b.	0.452
atf3	neurod1	ENSAPOP00000020376	ENSAPOP00000002632	Activating transcription factor 3.	Neurogenic differentiation factor.	0.885
dcx	neurod1	ENSAPOP00000013900	ENSAPOP00000002632	Uncharacterized protein.	Neurogenic differentiation factor.	0.716
dcx	pcna	ENSAPOP00000013900	ENSAPOP00000018841	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.870
elavl3	LOC110950077	ENSAPOP00000014650	ENSAPOP00000020919	ELAV-like protein; Belongs to the RRM elav family.	NK2 homeobox 2a.	0.584