Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110959367Si:ch211-269e2.1. (1175 aa)    
Predicted Functional Partners:
LOC110966581
Structural maintenance of chromosomes protein.
   
 0.993
smc1a
Structural maintenance of chromosomes protein.
   
 0.993
LOC110948719
RAD21 cohesin complex component a.
   
 0.989
ENSAPOP00000022986
Rad21_Rec8_N domain-containing protein.
   
 0.989
smc3
Structural maintenance of chromosomes protein.
   
 0.989
LOC110968057
RAD21 cohesin complex component b.
   
 0.989
LOC110967977
Rad21_Rec8 domain-containing protein.
   
 0.944
ENSAPOP00000033046
Extra spindle pole bodies like 1, separase.
   
 0.941
pds5a
PDS5 cohesin associated factor A.
   
 0.940
pds5b
PDS5 cohesin associated factor B.
   
 0.940
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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