cntnap5 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cntnap5

Contactin associated protein-like 5a. (1212 aa)

Predicted Functional Partners:

cntn2

0.853

LOC110957871

0.822

LOC110954495

0.716

LOC110972231

0.716

LOC110959670

0.716

LOC110959642

0.716

cntn3

0.716

LOC110954496

0.716

CNTN1

0.716

cntn5

0.716

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTN1	LOC110957871	ENSAPOP00000030422	ENSAPOP00000013840	Contactin 1.	Uncharacterized protein.	0.927
CNTN1	LOC110972231	ENSAPOP00000030422	ENSAPOP00000010087	Contactin 1.	Contactin 1b.	0.865
CNTN1	cntnap5	ENSAPOP00000030422	ENSAPOP00000002847	Contactin 1.	Contactin associated protein-like 5a.	0.716
LOC110954495	LOC110957871	ENSAPOP00000009345	ENSAPOP00000013840	Contactin 4.	Uncharacterized protein.	0.876
LOC110954495	cntnap5	ENSAPOP00000009345	ENSAPOP00000002847	Contactin 4.	Contactin associated protein-like 5a.	0.716
LOC110954496	LOC110957871	ENSAPOP00000027229	ENSAPOP00000013840	Uncharacterized protein.	Uncharacterized protein.	0.876
LOC110954496	cntnap5	ENSAPOP00000027229	ENSAPOP00000002847	Uncharacterized protein.	Contactin associated protein-like 5a.	0.716
LOC110957871	CNTN1	ENSAPOP00000013840	ENSAPOP00000030422	Uncharacterized protein.	Contactin 1.	0.927
LOC110957871	LOC110954495	ENSAPOP00000013840	ENSAPOP00000009345	Uncharacterized protein.	Contactin 4.	0.876
LOC110957871	LOC110954496	ENSAPOP00000013840	ENSAPOP00000027229	Uncharacterized protein.	Uncharacterized protein.	0.876
LOC110957871	LOC110959642	ENSAPOP00000013840	ENSAPOP00000011501	Uncharacterized protein.	Contactin 3a, tandem duplicate 1.	0.876
LOC110957871	LOC110959670	ENSAPOP00000013840	ENSAPOP00000010832	Uncharacterized protein.	Contactin 3a, tandem duplicate 2.	0.876
LOC110957871	LOC110972231	ENSAPOP00000013840	ENSAPOP00000010087	Uncharacterized protein.	Contactin 1b.	0.927
LOC110957871	cntn2	ENSAPOP00000013840	ENSAPOP00000009512	Uncharacterized protein.	Contactin 2.	0.840
LOC110957871	cntn3	ENSAPOP00000013840	ENSAPOP00000011869	Uncharacterized protein.	Contactin 3b.	0.876
LOC110957871	cntn5	ENSAPOP00000013840	ENSAPOP00000034630	Uncharacterized protein.	Contactin 5.	0.876
LOC110957871	cntnap5	ENSAPOP00000013840	ENSAPOP00000002847	Uncharacterized protein.	Contactin associated protein-like 5a.	0.822
LOC110959642	LOC110957871	ENSAPOP00000011501	ENSAPOP00000013840	Contactin 3a, tandem duplicate 1.	Uncharacterized protein.	0.876
LOC110959642	cntnap5	ENSAPOP00000011501	ENSAPOP00000002847	Contactin 3a, tandem duplicate 1.	Contactin associated protein-like 5a.	0.716
LOC110959670	LOC110957871	ENSAPOP00000010832	ENSAPOP00000013840	Contactin 3a, tandem duplicate 2.	Uncharacterized protein.	0.876