Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
TMEM87ATransmembrane protein 87A. (551 aa)    
Predicted Functional Partners:
DDRGK1
DDRGK domain containing 1.
     
  0.581
lman1
Lectin, mannose-binding, 1.
     
  0.581
vamp4
Vesicle-associated membrane protein 4.
    
   0.572
SMIM7
Small integral membrane protein 7.
      
 0.572
ccdc186
Si:ch211-225b10.4.
   
  
 0.568
casc4
Cancer susceptibility candidate 4.
      
 0.554
tm9sf3
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
      
 0.531
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
      
 0.521
LOC110969361
VAMP (vesicle-associated membrane protein)-associated protein B and C.
     
  0.503
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
     
  0.503
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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