STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPOP00000003104HMG box domain-containing protein. (118 aa)    
Predicted Functional Partners:
LOC110955292
Uncharacterized protein.
    
 0.628
ENSAPOP00000000911
Inter-alpha-trypsin inhibitor heavy chain family member 6.
    
 0.618
LOC110952953
Ataxin 1b.
    
 
 0.600
LOC110957394
AXH domain-containing protein.
    
 
 0.600
atxn1l
Ataxin 1-like.
    
 
 0.600
atxn1
Ataxin 1a.
    
 
 0.600
irak1
Protein kinase domain-containing protein.
    
  0.578
LOC110955255
Protein kinase domain-containing protein.
    
  0.578
LOC110957542
Zgc:113162.
    
  0.578
LOC110967121
Testis associated actin remodelling kinase 2.
    
  0.578
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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