Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC110950508UTP23 small subunit processome component. (252 aa)    
Predicted Functional Partners:
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
   
 0.962
nhp2
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 
 0.946
ENSAPOP00000005999
ZP domain-containing protein.
   
 0.944
LOC110968835
Zona pellucida glycoprotein d.
   
 0.944
krr1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.944
wdr43
WD repeat domain 43.
   
 
 0.943
UTP14C
UTP14C small subunit processome component.
   
 0.933
utp3
UTP3 small subunit processome component.
   
 0.930
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.921
dcaf13
Ddb1 and cul4 associated factor 13.
   
 0.914
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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