Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cochCoagulation factor C homolog, cochlin (Limulus polyphemus). (530 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.791
ENSAPOP00000019165
Fras1 related extracellular matrix 1b.
    
 0.714
frem1
Fras1 related extracellular matrix 1a.
    
 0.714
ENSAPOP00000016008
PDZ domain-containing protein.
     
  0.711
RIMS2
Regulating synaptic membrane exocytosis 2.
     
  0.711
ENSAPOP00000009286
Uncharacterized protein.
    
 0.694
ENSAPOP00000031368
Uncharacterized protein.
    
 0.694
LOC110964394
RAN binding protein 2.
    
  0.660
LOC110960997
Serine/arginine repetitive matrix 4.
    
 0.630
tecta
Tectorin alpha.
     
 0.615
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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