LOC110972296 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110972296

Uncharacterized protein. (146 aa)

Predicted Functional Partners:

LOC110960275

0.877

MYOZ1

0.865

ENSAPOP00000026450

0.841

LOC110945548

0.819

ENSAPOP00000032889

0.819

LOC110948356

0.799

MYOM3

0.778

ENSAPOP00000014054

0.761

ENSAPOP00000015762

0.745

smyd1

0.745

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000014054	ENSAPOP00000015762	ENSAPOP00000014054	ENSAPOP00000015762	Uncharacterized protein.	Uncharacterized protein.	0.767
ENSAPOP00000014054	ENSAPOP00000032889	ENSAPOP00000014054	ENSAPOP00000032889	Uncharacterized protein.	annotation not available	0.440
ENSAPOP00000014054	LOC110945548	ENSAPOP00000014054	ENSAPOP00000032601	Uncharacterized protein.	Synaptopodin 2-like a.	0.440
ENSAPOP00000014054	LOC110960275	ENSAPOP00000014054	ENSAPOP00000011503	Uncharacterized protein.	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.679
ENSAPOP00000014054	LOC110972296	ENSAPOP00000014054	ENSAPOP00000003272	Uncharacterized protein.	Uncharacterized protein.	0.761
ENSAPOP00000014054	MYOM3	ENSAPOP00000014054	ENSAPOP00000020915	Uncharacterized protein.	Uncharacterized protein.	0.727
ENSAPOP00000014054	smyd1	ENSAPOP00000014054	ENSAPOP00000023353	Uncharacterized protein.	Uncharacterized protein.	0.767
ENSAPOP00000015762	ENSAPOP00000014054	ENSAPOP00000015762	ENSAPOP00000014054	Uncharacterized protein.	Uncharacterized protein.	0.767
ENSAPOP00000015762	ENSAPOP00000032889	ENSAPOP00000015762	ENSAPOP00000032889	Uncharacterized protein.	annotation not available	0.596
ENSAPOP00000015762	LOC110945548	ENSAPOP00000015762	ENSAPOP00000032601	Uncharacterized protein.	Synaptopodin 2-like a.	0.596
ENSAPOP00000015762	LOC110960275	ENSAPOP00000015762	ENSAPOP00000011503	Uncharacterized protein.	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.811
ENSAPOP00000015762	LOC110972296	ENSAPOP00000015762	ENSAPOP00000003272	Uncharacterized protein.	Uncharacterized protein.	0.745
ENSAPOP00000015762	MYOM3	ENSAPOP00000015762	ENSAPOP00000020915	Uncharacterized protein.	Uncharacterized protein.	0.747
ENSAPOP00000026450	ENSAPOP00000032889	ENSAPOP00000026450	ENSAPOP00000032889	Uncharacterized protein.	annotation not available	0.812
ENSAPOP00000026450	LOC110945548	ENSAPOP00000026450	ENSAPOP00000032601	Uncharacterized protein.	Synaptopodin 2-like a.	0.812
ENSAPOP00000026450	LOC110948356	ENSAPOP00000026450	ENSAPOP00000000449	Uncharacterized protein.	Myozenin 1b.	0.873
ENSAPOP00000026450	LOC110972296	ENSAPOP00000026450	ENSAPOP00000003272	Uncharacterized protein.	Uncharacterized protein.	0.841
ENSAPOP00000026450	MYOZ1	ENSAPOP00000026450	ENSAPOP00000032607	Uncharacterized protein.	Myozenin 1.	0.912
ENSAPOP00000032889	ENSAPOP00000014054	ENSAPOP00000032889	ENSAPOP00000014054	annotation not available	Uncharacterized protein.	0.440
ENSAPOP00000032889	ENSAPOP00000015762	ENSAPOP00000032889	ENSAPOP00000015762	annotation not available	Uncharacterized protein.	0.596