Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
papolgPoly(A) polymerase gamma. (856 aa)    
Predicted Functional Partners:
sympk
Symplekin.
   
 0.975
pcf11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.971
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.969
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.968
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
    
 0.968
ENSAPOP00000007876
Uncharacterized protein.
   
 0.967
WDR33
WD repeat domain 33.
   
 0.965
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
    
 0.962
exosc10
Exosome component 10.
    
 0.957
zfc3h1
Uncharacterized protein.
   
 0.951
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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