fry protein (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

fry

Furry homolog a (Drosophila). (2982 aa)

Predicted Functional Partners:

stk38l

0.870

LOC110961869

0.870

LOC110958400

0.508

LOC110957111

0.508

cab39

0.508

stk25

0.474

LOC110966763

0.474

stk26

0.474

stk24

0.474

LOC110963591

0.470

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110957111	LOC110958400	ENSAPOP00000019193	ENSAPOP00000012815	Calcium binding protein 39, like 1.	Calcium binding protein 39-like.	0.824
LOC110957111	LOC110961869	ENSAPOP00000019193	ENSAPOP00000018180	Calcium binding protein 39, like 1.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.566
LOC110957111	LOC110966763	ENSAPOP00000019193	ENSAPOP00000015018	Calcium binding protein 39, like 1.	Serine/threonine kinase 24b (STE20 homolog, yeast).	0.761
LOC110957111	cab39	ENSAPOP00000019193	ENSAPOP00000024589	Calcium binding protein 39, like 1.	Calcium binding protein 39.	0.824
LOC110957111	fry	ENSAPOP00000019193	ENSAPOP00000003307	Calcium binding protein 39, like 1.	Furry homolog a (Drosophila).	0.508
LOC110957111	stk24	ENSAPOP00000019193	ENSAPOP00000032285	Calcium binding protein 39, like 1.	Serine/threonine kinase 24.	0.761
LOC110957111	stk25	ENSAPOP00000019193	ENSAPOP00000011479	Calcium binding protein 39, like 1.	Serine/threonine kinase 25b.	0.761
LOC110957111	stk26	ENSAPOP00000019193	ENSAPOP00000019296	Calcium binding protein 39, like 1.	Serine/threonine protein kinase 26.	0.761
LOC110957111	stk38l	ENSAPOP00000019193	ENSAPOP00000005088	Calcium binding protein 39, like 1.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.566
LOC110958400	LOC110957111	ENSAPOP00000012815	ENSAPOP00000019193	Calcium binding protein 39-like.	Calcium binding protein 39, like 1.	0.824
LOC110958400	LOC110961869	ENSAPOP00000012815	ENSAPOP00000018180	Calcium binding protein 39-like.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.566
LOC110958400	LOC110966763	ENSAPOP00000012815	ENSAPOP00000015018	Calcium binding protein 39-like.	Serine/threonine kinase 24b (STE20 homolog, yeast).	0.761
LOC110958400	cab39	ENSAPOP00000012815	ENSAPOP00000024589	Calcium binding protein 39-like.	Calcium binding protein 39.	0.894
LOC110958400	fry	ENSAPOP00000012815	ENSAPOP00000003307	Calcium binding protein 39-like.	Furry homolog a (Drosophila).	0.508
LOC110958400	stk24	ENSAPOP00000012815	ENSAPOP00000032285	Calcium binding protein 39-like.	Serine/threonine kinase 24.	0.761
LOC110958400	stk25	ENSAPOP00000012815	ENSAPOP00000011479	Calcium binding protein 39-like.	Serine/threonine kinase 25b.	0.761
LOC110958400	stk26	ENSAPOP00000012815	ENSAPOP00000019296	Calcium binding protein 39-like.	Serine/threonine protein kinase 26.	0.761
LOC110958400	stk38l	ENSAPOP00000012815	ENSAPOP00000005088	Calcium binding protein 39-like.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.566
LOC110961869	LOC110957111	ENSAPOP00000018180	ENSAPOP00000019193	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Calcium binding protein 39, like 1.	0.566
LOC110961869	LOC110958400	ENSAPOP00000018180	ENSAPOP00000012815	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Calcium binding protein 39-like.	0.566