tnrc18 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tnrc18

Trinucleotide repeat containing 18. (3070 aa)

Predicted Functional Partners:

SINHCAF

0.919

LOC110961345

0.919

sap30l

0.866

LOC110956824

0.839

sin3a

0.830

sin3b

0.830

LOC110967500

0.830

ing1

0.813

UNC79

0.775

mrpl15

0.738

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110956824	LOC110961345	ENSAPOP00000011448	ENSAPOP00000016708	SIN3-HDAC complex associated factor, like.	Uncharacterized protein.	0.551
LOC110956824	LOC110967500	ENSAPOP00000011448	ENSAPOP00000026325	SIN3-HDAC complex associated factor, like.	HDAC_interact domain-containing protein.	0.833
LOC110956824	SINHCAF	ENSAPOP00000011448	ENSAPOP00000003004	SIN3-HDAC complex associated factor, like.	SIN3-HDAC complex associated factor.	0.552
LOC110956824	ing1	ENSAPOP00000011448	ENSAPOP00000021686	SIN3-HDAC complex associated factor, like.	Inhibitor of growth protein.	0.869
LOC110956824	sap30l	ENSAPOP00000011448	ENSAPOP00000034267	SIN3-HDAC complex associated factor, like.	Sap30-like.	0.861
LOC110956824	sin3a	ENSAPOP00000011448	ENSAPOP00000013968	SIN3-HDAC complex associated factor, like.	SIN3 transcription regulator family member Aa.	0.833
LOC110956824	sin3b	ENSAPOP00000011448	ENSAPOP00000015601	SIN3-HDAC complex associated factor, like.	SIN3 transcription regulator family member B.	0.833
LOC110956824	tnrc18	ENSAPOP00000011448	ENSAPOP00000003322	SIN3-HDAC complex associated factor, like.	Trinucleotide repeat containing 18.	0.839
LOC110961345	LOC110956824	ENSAPOP00000016708	ENSAPOP00000011448	Uncharacterized protein.	SIN3-HDAC complex associated factor, like.	0.551
LOC110961345	LOC110967500	ENSAPOP00000016708	ENSAPOP00000026325	Uncharacterized protein.	HDAC_interact domain-containing protein.	0.902
LOC110961345	SINHCAF	ENSAPOP00000016708	ENSAPOP00000003004	Uncharacterized protein.	SIN3-HDAC complex associated factor.	0.546
LOC110961345	ing1	ENSAPOP00000016708	ENSAPOP00000021686	Uncharacterized protein.	Inhibitor of growth protein.	0.939
LOC110961345	sap30l	ENSAPOP00000016708	ENSAPOP00000034267	Uncharacterized protein.	Sap30-like.	0.944
LOC110961345	sin3a	ENSAPOP00000016708	ENSAPOP00000013968	Uncharacterized protein.	SIN3 transcription regulator family member Aa.	0.902
LOC110961345	sin3b	ENSAPOP00000016708	ENSAPOP00000015601	Uncharacterized protein.	SIN3 transcription regulator family member B.	0.897
LOC110961345	tnrc18	ENSAPOP00000016708	ENSAPOP00000003322	Uncharacterized protein.	Trinucleotide repeat containing 18.	0.919
LOC110967500	LOC110956824	ENSAPOP00000026325	ENSAPOP00000011448	HDAC_interact domain-containing protein.	SIN3-HDAC complex associated factor, like.	0.833
LOC110967500	LOC110961345	ENSAPOP00000026325	ENSAPOP00000016708	HDAC_interact domain-containing protein.	Uncharacterized protein.	0.902
LOC110967500	SINHCAF	ENSAPOP00000026325	ENSAPOP00000003004	HDAC_interact domain-containing protein.	SIN3-HDAC complex associated factor.	0.902
LOC110967500	ing1	ENSAPOP00000026325	ENSAPOP00000021686	HDAC_interact domain-containing protein.	Inhibitor of growth protein.	0.884