STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110967624Casein kinase 1, epsilon; Belongs to the protein kinase superfamily. (420 aa)    
Predicted Functional Partners:
ltv1
LTV1 ribosome biogenesis factor.
    
 0.971
bysl
Bystin-like.
    
 0.925
riok2
RIO kinase 2 (yeast).
    
 0.921
csnk1a1
Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.
  
 
0.901
tsr1
TSR1 ribosome maturation factor.
    
 0.890
LOC110950458
PAS domain-containing protein.
    
 0.872
LOC110957224
Period circadian clock 2.
    
 0.872
per1
Period circadian clock 1b.
    
 0.872
ENSAPOP00000025223
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.872
LOC110958256
Period circadian clock 3.
    
 0.872
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.