STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110952953Ataxin 1b. (823 aa)    
Predicted Functional Partners:
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.921
LOC110954674
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.921
LOC110953659
Capicua transcriptional repressor a.
    
 
 0.875
cic
Capicua transcriptional repressor b.
    
 
 0.875
atxn1l
Ataxin 1-like.
    
0.869
LOC110961546
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
 0.864
ist1
IST1 factor associated with ESCRT-III.
    
 0.710
LOC110961675
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 0.619
LOC110960112
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 0.619
hbp1
HMG-box transcription factor 1.
    
 
 0.617
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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