STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrmdaLeucine rich melanocyte differentiation associated. (213 aa)    
Predicted Functional Partners:
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.966
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.962
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.959
sf3a3
Splicing factor 3a, subunit 3.
   
 0.957
ENSAPOP00000022281
Small nuclear ribonucleoprotein polypeptide F.
   
 0.955
sf3b1
Splicing factor 3b, subunit 1.
   
 0.949
sf3a1
Splicing factor 3a, subunit 1.
   
 0.948
sf3b3
Splicing factor 3b, subunit 3.
    
 0.946
sf3b2
Splicing factor 3b, subunit 2.
   
 0.943
sf3b4
Splicing factor 3b, subunit 4.
    
 0.940
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.