Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110960535Si:dkeyp-117b11.1. (322 aa)    
Predicted Functional Partners:
LOC110948648
ATP-binding cassette, sub-family A (ABC1), member 12.
      
 0.683
snap29
Synaptosome associated protein 29.
      
 0.682
LOC110960533
Si:dkey-178e17.1; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.469
LOC110955002
Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.469
abcc10
ATP-binding cassette, sub-family C (CFTR/MRP), member 10.
      
 0.466
LOC110960507
Solute carrier family 25 member 1a; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.400
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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