Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPOP00000003858Mesoderm posterior aa. (227 aa)    
Predicted Functional Partners:
LOC110954856
Hairy and enhancer of split related-7.
    
 0.609
LOC110954863
BHLH domain-containing protein.
    
 0.609
gata4
GATA binding protein 4.
   
 0.606
tbpl2
TATA box binding protein like 2.
      
 0.579
ENSAPOP00000004334
Uncharacterized protein.
    
 0.569
LOC110967144
Transcription factor 3a.
    
 0.569
LOC110949229
Transcription factor 3b.
    
 0.569
LOC110950375
BHLH domain-containing protein.
    
 0.569
ENSAPOP00000030307
Uncharacterized protein.
    
 0.569
tcf12
Transcription factor 12.
    
 0.569
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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