Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPOP00000003936Stabilin 2. (1342 aa)    
Predicted Functional Partners:
gulp1
GULP PTB domain containing engulfment adaptor 1a.
    
 0.936
LOC110970167
PID domain-containing protein.
    
 0.901
ENSAPOP00000023587
SPARC-like 2.
     
 0.759
sparc
Secreted protein, acidic, cysteine-rich (osteonectin).
     
 0.759
LOC110961433
Link domain-containing protein.
   
 0.660
lyve1
Link domain-containing protein.
   
 0.660
mrvi1
Murine retrovirus integration site 1 homolog.
   
 0.660
reep3
Receptor expression-enhancing protein.
      
 0.652
tsnare1
Si:ch211-208k15.1.
      
 0.647
tnfrsf13b
TNFR-Cys domain-containing protein.
    
 0.626
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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