yif1a protein (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

yif1a

Yip1 interacting factor homolog A (S. cerevisiae). (308 aa)

Predicted Functional Partners:

yipf5

0.929

rabac1

0.911

yipf4

0.907

selenos

0.892

maea

0.852

tmed10

0.799

derl1

0.785

kdelr3

0.744

LOC110969519

0.744

LOC110956726

0.744

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110956726	selenos	ENSAPOP00000015252	ENSAPOP00000003647	ER lumen protein-retaining receptor.	Selenoprotein S.	0.456
LOC110956726	tmed10	ENSAPOP00000015252	ENSAPOP00000031896	ER lumen protein-retaining receptor.	Transmembrane p24 trafficking protein 10.	0.947
LOC110956726	yif1a	ENSAPOP00000015252	ENSAPOP00000003948	ER lumen protein-retaining receptor.	Yip1 interacting factor homolog A (S. cerevisiae).	0.744
LOC110956726	yipf4	ENSAPOP00000015252	ENSAPOP00000007576	ER lumen protein-retaining receptor.	Protein YIPF.	0.418
LOC110956726	yipf5	ENSAPOP00000015252	ENSAPOP00000030127	ER lumen protein-retaining receptor.	Protein YIPF.	0.558
LOC110969519	selenos	ENSAPOP00000004697	ENSAPOP00000003647	ER lumen protein-retaining receptor.	Selenoprotein S.	0.456
LOC110969519	tmed10	ENSAPOP00000004697	ENSAPOP00000031896	ER lumen protein-retaining receptor.	Transmembrane p24 trafficking protein 10.	0.947
LOC110969519	yif1a	ENSAPOP00000004697	ENSAPOP00000003948	ER lumen protein-retaining receptor.	Yip1 interacting factor homolog A (S. cerevisiae).	0.744
LOC110969519	yipf4	ENSAPOP00000004697	ENSAPOP00000007576	ER lumen protein-retaining receptor.	Protein YIPF.	0.418
LOC110969519	yipf5	ENSAPOP00000004697	ENSAPOP00000030127	ER lumen protein-retaining receptor.	Protein YIPF.	0.558
derl1	selenos	ENSAPOP00000023185	ENSAPOP00000003647	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Selenoprotein S.	0.994
derl1	tmed10	ENSAPOP00000023185	ENSAPOP00000031896	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Transmembrane p24 trafficking protein 10.	0.414
derl1	yif1a	ENSAPOP00000023185	ENSAPOP00000003948	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Yip1 interacting factor homolog A (S. cerevisiae).	0.785
derl1	yipf4	ENSAPOP00000023185	ENSAPOP00000007576	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Protein YIPF.	0.659
derl1	yipf5	ENSAPOP00000023185	ENSAPOP00000030127	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Protein YIPF.	0.939
kdelr3	selenos	ENSAPOP00000001795	ENSAPOP00000003647	ER lumen protein-retaining receptor.	Selenoprotein S.	0.456
kdelr3	tmed10	ENSAPOP00000001795	ENSAPOP00000031896	ER lumen protein-retaining receptor.	Transmembrane p24 trafficking protein 10.	0.947
kdelr3	yif1a	ENSAPOP00000001795	ENSAPOP00000003948	ER lumen protein-retaining receptor.	Yip1 interacting factor homolog A (S. cerevisiae).	0.744
kdelr3	yipf4	ENSAPOP00000001795	ENSAPOP00000007576	ER lumen protein-retaining receptor.	Protein YIPF.	0.418
kdelr3	yipf5	ENSAPOP00000001795	ENSAPOP00000030127	ER lumen protein-retaining receptor.	Protein YIPF.	0.558