Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110960005PH domain-containing protein. (940 aa)    
Predicted Functional Partners:
pdzd11
PDZ domain containing 11.
    
 0.933
rps27a
Ribosomal protein S27a.
    
  0.725
plekha4
PH domain-containing protein.
    
 0.681
lats1
Large tumor suppressor kinase 1.
    
 0.676
lats2
Large tumor suppressor kinase 2.
    
 0.676
LOC110945805
FERM domain containing 4Ba.
    
 0.658
LOC110957877
FERM domain containing 4Bb.
    
 0.658
frmd4a
FERM domain containing 4A.
    
 0.658
fbxw11
F-box and WD repeat domain containing 11a.
    
 0.652
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 0.645
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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