Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cabcoco1Uncharacterized protein. (199 aa)    
Predicted Functional Partners:
fancm
Helicase C-terminal domain-containing protein.
    
 0.797
ENSAPOP00000011687
Helicase ATP-binding domain-containing protein.
    
 0.797
phf13
PHD finger protein 13.
    
 0.759
SBSPON
Somatomedin B and thrombospondin type 1 domain containing.
    
 0.756
h6pd
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
   
 
 0.707
ccdc146
Coiled-coil domain containing 146.
      
 0.698
tcte1
T-complex-associated-testis-expressed 1.
    
 
 0.682
sdr39u1
Short chain dehydrogenase/reductase family 39U, member 1.
      
 0.673
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.666
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.659
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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