STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110945312Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family. (345 aa)    
Predicted Functional Partners:
rbsn
Rabenosyn, RAB effector.
    
 0.996
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 
 0.993
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 
 0.968
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 
 0.948
stx6
Syntaxin 6; Belongs to the syntaxin family.
    
 
 0.943
ENSAPOP00000030593
Syntaxin-6_N domain-containing protein.
    
 
 0.943
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.933
vps18
VPS18 core subunit of CORVET and HOPS complexes.
    
 0.918
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.917
capzb
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
   0.907
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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