Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110945312Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family. (345 aa)    
Predicted Functional Partners:
rbsn
Rabenosyn, RAB effector.
    
 0.999
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 
 0.990
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 
 0.990
vps18
VPS18 core subunit of CORVET and HOPS complexes.
    
 0.970
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 
 0.955
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 
 0.933
vps33a
VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.932
stx6
Syntaxin 6; Belongs to the syntaxin family.
    
 
 0.928
ENSAPOP00000030593
Syntaxin-6_N domain-containing protein.
    
 
 0.928
vamp4
Vesicle-associated membrane protein 4.
    
 
 0.926
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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