LOC110951711 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110951711

RAB6A, member RAS oncogene family. (217 aa)

Predicted Functional Partners:

RIC1

0.935

rgp1

0.926

cog6

0.919

arfrp1

0.914

vps52

0.910

LOC110958627

0.908

LOC110948336

0.908

cog8

0.887

LOC110962214

0.884

arl1

0.884

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110948336	LOC110951711	ENSAPOP00000021541	ENSAPOP00000004089	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB6A, member RAS oncogene family.	0.908
LOC110948336	LOC110962214	ENSAPOP00000021541	ENSAPOP00000006649	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.440
LOC110948336	RIC1	ENSAPOP00000021541	ENSAPOP00000007048	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.760
LOC110948336	arl1	ENSAPOP00000021541	ENSAPOP00000021725	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.	0.456
LOC110948336	cog8	ENSAPOP00000021541	ENSAPOP00000025213	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	0.412
LOC110948336	rgp1	ENSAPOP00000021541	ENSAPOP00000011850	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	GP1 homolog, RAB6A GEF complex partner 1.	0.569
LOC110951711	LOC110948336	ENSAPOP00000004089	ENSAPOP00000021541	RAB6A, member RAS oncogene family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.908
LOC110951711	LOC110958627	ENSAPOP00000004089	ENSAPOP00000003474	RAB6A, member RAS oncogene family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.908
LOC110951711	LOC110962214	ENSAPOP00000004089	ENSAPOP00000006649	RAB6A, member RAS oncogene family.	Uncharacterized protein.	0.884
LOC110951711	RIC1	ENSAPOP00000004089	ENSAPOP00000007048	RAB6A, member RAS oncogene family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.935
LOC110951711	arfrp1	ENSAPOP00000004089	ENSAPOP00000026832	RAB6A, member RAS oncogene family.	ADP-ribosylation factor related protein 1.	0.914
LOC110951711	arl1	ENSAPOP00000004089	ENSAPOP00000021725	RAB6A, member RAS oncogene family.	ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.	0.884
LOC110951711	cog6	ENSAPOP00000004089	ENSAPOP00000018872	RAB6A, member RAS oncogene family.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.919
LOC110951711	cog8	ENSAPOP00000004089	ENSAPOP00000025213	RAB6A, member RAS oncogene family.	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	0.887
LOC110951711	rgp1	ENSAPOP00000004089	ENSAPOP00000011850	RAB6A, member RAS oncogene family.	GP1 homolog, RAB6A GEF complex partner 1.	0.926
LOC110951711	vps52	ENSAPOP00000004089	ENSAPOP00000021956	RAB6A, member RAS oncogene family.	VPS52 subunit of GARP complex.	0.910
LOC110958627	LOC110951711	ENSAPOP00000003474	ENSAPOP00000004089	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB6A, member RAS oncogene family.	0.908
LOC110958627	LOC110962214	ENSAPOP00000003474	ENSAPOP00000006649	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.440
LOC110958627	RIC1	ENSAPOP00000003474	ENSAPOP00000007048	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.760
LOC110958627	arl1	ENSAPOP00000003474	ENSAPOP00000021725	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.	0.456