LOC110951711 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC110951711

RAB6A, member RAS oncogene family. (217 aa)

Predicted Functional Partners:

LOC110958627

0.926

LOC110948336

0.926

RIC1

0.921

GCC2

0.917

vps39

0.892

vps52

0.877

vps53

0.864

vps33b

0.861

vps33a

0.861

cog6

0.852

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCC2	LOC110951711	ENSAPOP00000014196	ENSAPOP00000004089	GRIP domain-containing protein.	RAB6A, member RAS oncogene family.	0.917
GCC2	RIC1	ENSAPOP00000014196	ENSAPOP00000007048	GRIP domain-containing protein.	RIC1 homolog, RAB6A GEF complex partner 1.	0.655
GCC2	cog6	ENSAPOP00000014196	ENSAPOP00000018872	GRIP domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.679
GCC2	vps52	ENSAPOP00000014196	ENSAPOP00000021956	GRIP domain-containing protein.	VPS52 subunit of GARP complex.	0.763
GCC2	vps53	ENSAPOP00000014196	ENSAPOP00000012297	GRIP domain-containing protein.	VPS53 subunit of GARP complex.	0.827
LOC110948336	LOC110951711	ENSAPOP00000021541	ENSAPOP00000004089	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB6A, member RAS oncogene family.	0.926
LOC110948336	RIC1	ENSAPOP00000021541	ENSAPOP00000007048	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.697
LOC110951711	GCC2	ENSAPOP00000004089	ENSAPOP00000014196	RAB6A, member RAS oncogene family.	GRIP domain-containing protein.	0.917
LOC110951711	LOC110948336	ENSAPOP00000004089	ENSAPOP00000021541	RAB6A, member RAS oncogene family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.926
LOC110951711	LOC110958627	ENSAPOP00000004089	ENSAPOP00000003474	RAB6A, member RAS oncogene family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.926
LOC110951711	RIC1	ENSAPOP00000004089	ENSAPOP00000007048	RAB6A, member RAS oncogene family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.921
LOC110951711	cog6	ENSAPOP00000004089	ENSAPOP00000018872	RAB6A, member RAS oncogene family.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.852
LOC110951711	vps33a	ENSAPOP00000004089	ENSAPOP00000027340	RAB6A, member RAS oncogene family.	VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family.	0.861
LOC110951711	vps33b	ENSAPOP00000004089	ENSAPOP00000006797	RAB6A, member RAS oncogene family.	VPS33B late endosome and lysosome associated; Belongs to the STXBP/unc-18/SEC1 family.	0.861
LOC110951711	vps39	ENSAPOP00000004089	ENSAPOP00000002755	RAB6A, member RAS oncogene family.	VPS39 subunit of HOPS complex.	0.892
LOC110951711	vps52	ENSAPOP00000004089	ENSAPOP00000021956	RAB6A, member RAS oncogene family.	VPS52 subunit of GARP complex.	0.877
LOC110951711	vps53	ENSAPOP00000004089	ENSAPOP00000012297	RAB6A, member RAS oncogene family.	VPS53 subunit of GARP complex.	0.864
LOC110958627	LOC110951711	ENSAPOP00000003474	ENSAPOP00000004089	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB6A, member RAS oncogene family.	0.926
LOC110958627	RIC1	ENSAPOP00000003474	ENSAPOP00000007048	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.697
RIC1	GCC2	ENSAPOP00000007048	ENSAPOP00000014196	RIC1 homolog, RAB6A GEF complex partner 1.	GRIP domain-containing protein.	0.655