Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110945897Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga; Belongs to the semaphorin family. (744 aa)    
Predicted Functional Partners:
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.746
ENSAPOP00000002476
Neuropilin; Belongs to the neuropilin family.
    
 
 0.650
LOC110963920
E3 ubiquitin-protein ligase.
     
  0.628
LOC110968687
E3 ubiquitin-protein ligase.
     
  0.628
met
MET proto-oncogene, receptor tyrosine kinase.
   
 0.620
mst1r
Macrophage stimulating 1 receptor b.
   
 0.620
LOC110972771
Uncharacterized protein.
   
 0.620
LOC110954670
Neuropilin; Belongs to the neuropilin family.
    
 0.600
LOC110958203
Neuropilin; Belongs to the neuropilin family.
      
 0.490
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
     
  0.485
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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