Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TPM1Uncharacterized protein; Belongs to the tropomyosin family. (297 aa)    
Predicted Functional Partners:
ACTC1
Zgc:86709.
   
 0.910
ENSAPOP00000016594
Troponin T2c, cardiac.
   
 0.905
LOC110949629
Troponin I type 1a (skeletal, slow).
   
 0.882
LOC110955606
Troponin T type 2b (cardiac).
   
 0.872
ENSAPOP00000013741
Uncharacterized protein.
   
 0.872
ENSAPOP00000031476
Troponin T type 2a (cardiac).
   
 0.872
ENSAPOP00000033983
Uncharacterized protein.
   
 0.872
LOC110963662
Zgc:163073.
   
 0.824
LOC110950704
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.824
LOC110950288
Troponin I4b, tandem duplicate 2.
   
 0.818
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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