LOC110955855 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110955855

Uncharacterized protein. (134 aa)

Predicted Functional Partners:

fau

0.998

rps7

0.998

rps16

0.998

RPS20

0.997

rpsa

0.997

rps10

0.997

rps26

0.997

rps24

0.997

rps11

0.997

rps23

0.997

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110955855	RPS20	ENSAPOP00000004147	ENSAPOP00000000710	Uncharacterized protein.	Ribosomal protein S20.	0.997
LOC110955855	fau	ENSAPOP00000004147	ENSAPOP00000005856	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.998
LOC110955855	rps10	ENSAPOP00000004147	ENSAPOP00000007963	Uncharacterized protein.	Ribosomal protein S10.	0.997
LOC110955855	rps11	ENSAPOP00000004147	ENSAPOP00000020980	Uncharacterized protein.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.997
LOC110955855	rps16	ENSAPOP00000004147	ENSAPOP00000031541	Uncharacterized protein.	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.998
LOC110955855	rps23	ENSAPOP00000004147	ENSAPOP00000023671	Uncharacterized protein.	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.997
LOC110955855	rps24	ENSAPOP00000004147	ENSAPOP00000014279	Uncharacterized protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.997
LOC110955855	rps26	ENSAPOP00000004147	ENSAPOP00000012661	Uncharacterized protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.997
LOC110955855	rps7	ENSAPOP00000004147	ENSAPOP00000012126	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.998
LOC110955855	rpsa	ENSAPOP00000004147	ENSAPOP00000007613	Uncharacterized protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family.	0.997
RPS20	LOC110955855	ENSAPOP00000000710	ENSAPOP00000004147	Ribosomal protein S20.	Uncharacterized protein.	0.997
RPS20	fau	ENSAPOP00000000710	ENSAPOP00000005856	Ribosomal protein S20.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
RPS20	rps10	ENSAPOP00000000710	ENSAPOP00000007963	Ribosomal protein S20.	Ribosomal protein S10.	0.999
RPS20	rps11	ENSAPOP00000000710	ENSAPOP00000020980	Ribosomal protein S20.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.999
RPS20	rps16	ENSAPOP00000000710	ENSAPOP00000031541	Ribosomal protein S20.	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.999
RPS20	rps23	ENSAPOP00000000710	ENSAPOP00000023671	Ribosomal protein S20.	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
RPS20	rps24	ENSAPOP00000000710	ENSAPOP00000014279	Ribosomal protein S20.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
RPS20	rps26	ENSAPOP00000000710	ENSAPOP00000012661	Ribosomal protein S20.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
RPS20	rps7	ENSAPOP00000000710	ENSAPOP00000012126	Ribosomal protein S20.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
RPS20	rpsa	ENSAPOP00000000710	ENSAPOP00000007613	Ribosomal protein S20.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family.	0.999