LOC110954031 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110954031

Placenta associated 8. (104 aa)

Predicted Functional Partners:

mysm1

0.620

med14

0.569

med1

0.562

rpl9

0.562

LOC110967910

0.554

med17

0.540

LOC110958709

0.532

med4

0.517

ncor1

0.506

LOC110953252

0.506

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110953252	LOC110954031	ENSAPOP00000012990	ENSAPOP00000004198	Uncharacterized protein.	Placenta associated 8.	0.506
LOC110953252	LOC110967910	ENSAPOP00000012990	ENSAPOP00000015038	Uncharacterized protein.	Nuclear receptor subfamily 1, group d, member 1.	0.888
LOC110953252	med1	ENSAPOP00000012990	ENSAPOP00000016815	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.485
LOC110953252	med14	ENSAPOP00000012990	ENSAPOP00000022195	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.628
LOC110953252	med17	ENSAPOP00000012990	ENSAPOP00000029833	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.590
LOC110953252	med4	ENSAPOP00000012990	ENSAPOP00000032469	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.555
LOC110953252	rpl9	ENSAPOP00000012990	ENSAPOP00000025014	Uncharacterized protein.	Ribosomal protein L9.	0.485
LOC110954031	LOC110953252	ENSAPOP00000004198	ENSAPOP00000012990	Placenta associated 8.	Uncharacterized protein.	0.506
LOC110954031	LOC110958709	ENSAPOP00000004198	ENSAPOP00000021724	Placenta associated 8.	Uncharacterized protein.	0.532
LOC110954031	LOC110967910	ENSAPOP00000004198	ENSAPOP00000015038	Placenta associated 8.	Nuclear receptor subfamily 1, group d, member 1.	0.554
LOC110954031	med1	ENSAPOP00000004198	ENSAPOP00000016815	Placenta associated 8.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.562
LOC110954031	med14	ENSAPOP00000004198	ENSAPOP00000022195	Placenta associated 8.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.569
LOC110954031	med17	ENSAPOP00000004198	ENSAPOP00000029833	Placenta associated 8.	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.540
LOC110954031	med4	ENSAPOP00000004198	ENSAPOP00000032469	Placenta associated 8.	Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.517
LOC110954031	mysm1	ENSAPOP00000004198	ENSAPOP00000031756	Placenta associated 8.	Myb-like, SWIRM and MPN domains 1.	0.620
LOC110954031	ncor1	ENSAPOP00000004198	ENSAPOP00000000887	Placenta associated 8.	Nuclear receptor corepressor 1.	0.506
LOC110954031	rpl9	ENSAPOP00000004198	ENSAPOP00000025014	Placenta associated 8.	Ribosomal protein L9.	0.562
LOC110958709	LOC110954031	ENSAPOP00000021724	ENSAPOP00000004198	Uncharacterized protein.	Placenta associated 8.	0.532
LOC110967910	LOC110953252	ENSAPOP00000015038	ENSAPOP00000012990	Nuclear receptor subfamily 1, group d, member 1.	Uncharacterized protein.	0.888
LOC110967910	LOC110954031	ENSAPOP00000015038	ENSAPOP00000004198	Nuclear receptor subfamily 1, group d, member 1.	Placenta associated 8.	0.554