Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
utp15UTP15 small subunit processome component. (528 aa)    
Predicted Functional Partners:
wdr75
WD repeat domain 75.
   
 0.999
wdr43
WD repeat domain 43.
  
 0.999
utp4
UTP4 small subunit processome component.
   
 0.999
heatr1
HEAT repeat containing 1.
   
 0.999
nop56
NOP56 ribonucleoprotein homolog.
   
 0.998
snu13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.998
utp18
Uncharacterized protein.
  
 0.998
wdr3
WD repeat domain 3.
   
 0.997
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 0.996
wdr46
WD repeat domain 46.
   
 0.996
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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