Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mitd1MIT, microtubule interacting and transport, domain containing 1. (246 aa)    
Predicted Functional Partners:
chmp2a
Charged multivesicular body protein 2A.
   
 
 0.934
chmp1a
Charged multivesicular body protein 1A.
    
 
 0.894
chmp1b
Chromatin modifying protein 1B.
    
 
 0.894
LOC110958569
Uncharacterized protein.
    
 
 0.894
LOC110945851
Uncharacterized protein.
   
 
 0.861
LOC110952610
Charged multivesicular body protein 5b.
   
 
 0.861
LOC110969702
Charged multivesicular body protein 5a.
   
 
 0.861
tmem121
Transmembrane protein 121Ab.
      
 0.823
akap17a
A kinase (PRKA) anchor protein 17A.
      
 0.805
ids
Iduronate 2-sulfatase.
      
 0.688
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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