Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB1SUB1 regulator of transcription. (148 aa)    
Predicted Functional Partners:
sympk
Symplekin.
    
 
 0.746
tma7
Translation machinery associated 7 homolog.
   
  
 0.693
gtf2b
General transcription factor IIB.
    
 
 0.642
supt5h
Transcription elongation factor SPT5.
    
 
 0.640
LOC110955119
Serine/arginine repetitive matrix 2.
   
   0.596
UBL5
Ubiquitin like 5.
   
    0.573
gtf3c1
Uncharacterized protein.
    
   0.559
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 
 0.556
pomp
Proteasome maturation protein.
   
  
 0.532
cnbp
CCHC-type zinc finger, nucleic acid binding protein a.
   
 
 0.514
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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