STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plekhf2Pleckstrin homology domain containing, family F (with FYVE domain) member 2. (244 aa)    
Predicted Functional Partners:
micu1
Mitochondrial calcium uptake 1.
   
 0.684
micu2
Mitochondrial calcium uptake 2.
   
 0.684
LOC110970569
RAB4B, member RAS oncogene family.
    
 0.629
rab4a
RAB4a, member RAS oncogene family.
    
 0.629
LOC110948886
Single-pass membrane protein with aspartate-rich tail 1b.
     
 0.607
ENSAPOP00000004648
Single-pass membrane protein with aspartate-rich tail 1a.
     
 0.607
nhlrc2
NHL repeat containing 2.
    
 0.586
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
     
 0.581
LOC110947956
MCU domain-containing protein.
     
 0.554
MCUB
Mitochondrial calcium uniporter dominant negative beta subunit.
     
 0.554
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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