STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110957500Copine Va. (573 aa)    
Predicted Functional Partners:
rnaseh2b
Ribonuclease H2, subunit B.
   
 
 0.698
rnaseh2a
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.655
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.584
LOC110952428
Myocardin related transcription factor Aa.
     
 0.566
LOC110970071
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
     
 0.520
LOC110950983
Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.
     
 0.520
vamp3
V-SNARE coiled-coil homology domain-containing protein.
   
 
 0.519
LOC110956643
Acetylserotonin O-methyltransferase 2.
     
 0.515
asmt
Acetylserotonin O-methyltransferase.
     
 0.515
FIG4
FIG4 phosphoinositide 5-phosphatase.
     
 0.514
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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