STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lhx1LIM homeobox 1a. (407 aa)    
Predicted Functional Partners:
ccnk
Cyclin K; Belongs to the cyclin family.
    
   0.835
ldb1
LIM-domain binding 1b.
    
 0.808
LOC110959119
LIM domain binding 1a.
    
 0.808
LOC110956568
LIM domain binding 2a.
    
 0.808
wnt4
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
   
 0.758
LOC110961825
Odd-skipped related transcription factor 1.
    
 0.708
nme9
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.690
emx2
Empty spiracles homeobox 2.
    
 0.683
ptf1a
Pancreas associated transcription factor 1a.
    
 0.663
hoxb4
Homeobox B4a.
    
 0.648
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.