Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110953478Shroom family member 1. (1607 aa)    
Predicted Functional Partners:
aff4
AF4/FMR2 family, member 4.
      
 0.632
ENSAPOP00000026041
Shroom family member 4.
      
 0.600
LOC110953481
Cyclin I family, member 2; Belongs to the cyclin family.
      
 0.567
LOC110962917
Uncharacterized protein.
      
 0.552
LOC110953466
Sosondowah ankyrin repeat domain family member A.
      
 0.529
LOC110961788
Uncharacterized protein.
  
     0.456
GAP43
Growth associated protein 43.
  
     0.454
LOC110960985
Pre-B-cell leukemia homeobox interacting protein 1a.
  
     0.427
ccng1
Cyclin G1; Belongs to the cyclin family.
      
 0.417
ccni
Cyclin I; Belongs to the cyclin family.
      
 0.413
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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