Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rhbdd1Rhomboid domain containing 1. (326 aa)    
Predicted Functional Partners:
LOC110967486
Zgc:136908; Belongs to the AAA ATPase family.
    
 
 0.907
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.907
ccnd1
Cyclin D1; Belongs to the cyclin family.
      
 0.885
klhl31
Kelch-like family member 31.
      
 0.811
tmem70
Transmembrane protein 70.
      
 0.779
tmem214
Transmembrane protein 214.
      
 0.770
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.726
SPATA5
Spermatogenesis associated 5.
    
 
 0.726
pigq
Phosphatidylinositol glycan anchor biosynthesis, class Q.
     
  0.715
pigc
Phosphatidylinositol glycan anchor biosynthesis, class C.
     
  0.715
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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