ENSAPOP00000004473 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSAPOP00000004473

Uncharacterized protein. (126 aa)

Predicted Functional Partners:

pald1

0.678

hook1

0.678

HOOK3

0.678

aktip

0.631

fcf1

0.627

tnfsf13b

0.614

ankfy1

0.534

ints10

0.495

LOC110961809

0.468

dpf1

0.464

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000004473	HOOK3	ENSAPOP00000004473	ENSAPOP00000033177	Uncharacterized protein.	Hook microtubule tethering protein 3.	0.678
ENSAPOP00000004473	LOC110961809	ENSAPOP00000004473	ENSAPOP00000034827	Uncharacterized protein.	Homeobox containing 1a.	0.468
ENSAPOP00000004473	aktip	ENSAPOP00000004473	ENSAPOP00000034088	Uncharacterized protein.	Akt interacting protein.	0.631
ENSAPOP00000004473	ankfy1	ENSAPOP00000004473	ENSAPOP00000023414	Uncharacterized protein.	Ankyrin repeat and FYVE domain containing 1.	0.534
ENSAPOP00000004473	dpf1	ENSAPOP00000004473	ENSAPOP00000024449	Uncharacterized protein.	D4, zinc and double PHD fingers family 1.	0.464
ENSAPOP00000004473	fcf1	ENSAPOP00000004473	ENSAPOP00000008364	Uncharacterized protein.	FCF1 rRNA-processing protein.	0.627
ENSAPOP00000004473	hook1	ENSAPOP00000004473	ENSAPOP00000022375	Uncharacterized protein.	Hook microtubule-tethering protein 1.	0.678
ENSAPOP00000004473	ints10	ENSAPOP00000004473	ENSAPOP00000014565	Uncharacterized protein.	Integrator complex subunit 10.	0.495
ENSAPOP00000004473	pald1	ENSAPOP00000004473	ENSAPOP00000014751	Uncharacterized protein.	Phosphatase domain containing paladin 1a.	0.678
ENSAPOP00000004473	tnfsf13b	ENSAPOP00000004473	ENSAPOP00000023714	Uncharacterized protein.	TNF superfamily member 13b; Belongs to the tumor necrosis factor family.	0.614
HOOK3	ENSAPOP00000004473	ENSAPOP00000033177	ENSAPOP00000004473	Hook microtubule tethering protein 3.	Uncharacterized protein.	0.678
HOOK3	aktip	ENSAPOP00000033177	ENSAPOP00000034088	Hook microtubule tethering protein 3.	Akt interacting protein.	0.943
HOOK3	tnfsf13b	ENSAPOP00000033177	ENSAPOP00000023714	Hook microtubule tethering protein 3.	TNF superfamily member 13b; Belongs to the tumor necrosis factor family.	0.782
LOC110961809	ENSAPOP00000004473	ENSAPOP00000034827	ENSAPOP00000004473	Homeobox containing 1a.	Uncharacterized protein.	0.468
aktip	ENSAPOP00000004473	ENSAPOP00000034088	ENSAPOP00000004473	Akt interacting protein.	Uncharacterized protein.	0.631
aktip	HOOK3	ENSAPOP00000034088	ENSAPOP00000033177	Akt interacting protein.	Hook microtubule tethering protein 3.	0.943
aktip	hook1	ENSAPOP00000034088	ENSAPOP00000022375	Akt interacting protein.	Hook microtubule-tethering protein 1.	0.943
aktip	tnfsf13b	ENSAPOP00000034088	ENSAPOP00000023714	Akt interacting protein.	TNF superfamily member 13b; Belongs to the tumor necrosis factor family.	0.970
ankfy1	ENSAPOP00000004473	ENSAPOP00000023414	ENSAPOP00000004473	Ankyrin repeat and FYVE domain containing 1.	Uncharacterized protein.	0.534
dpf1	ENSAPOP00000004473	ENSAPOP00000024449	ENSAPOP00000004473	D4, zinc and double PHD fingers family 1.	Uncharacterized protein.	0.464