Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPOP00000004485SRY-box transcription factor 1a. (344 aa)    
Predicted Functional Partners:
LOC110966381
POU domain protein.
    
 0.936
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.832
sall4
Spalt-like transcription factor 4.
   
 0.824
foxd3
Forkhead box D3.
    
 0.766
LOC110955142
Forkhead box J1a.
    
 0.715
pitx2
Homeobox protein.
    
 
 0.706
kctd12
Potassium channel tetramerisation domain containing 12.1.
    
 
 0.686
ENSAPOP00000034906
BTB domain-containing protein.
    
 
 0.686
LOC110956585
SIX homeobox 7.
   
 
 0.685
tcf7l2
Transcription factor 7 like 2.
    
0.682
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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