Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arhgef28Rho guanine nucleotide exchange factor (GEF) 28a. (1625 aa)    
Predicted Functional Partners:
stk11
Serine/threonine kinase 11; Belongs to the protein kinase superfamily.
     
  0.785
LOC110960989
Cingulin b.
     
  0.785
LOC110971163
Uncharacterized protein.
     
  0.785
cgnl1
Cingulin-like 1.
     
 0.728
LOC110950361
Uncharacterized protein.
     
  0.714
LOC110962182
Guanine nucleotide binding protein (G protein), alpha 13b.
    
 0.708
gna12
G protein subunit alpha 12.
    
 0.708
LOC110959430
Uncharacterized protein.
    
 0.708
ENSAPOP00000026071
Si:dkey-238m4.3.
     
  0.708
ENSAPOP00000028391
Uncharacterized protein.
    
 0.708
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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