Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
dnajc8DnaJ (Hsp40) homolog, subfamily C, member 8. (250 aa)    
Predicted Functional Partners:
sf3a2
Splicing factor 3a, subunit 2.
    
 
 0.974
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
     
  0.965
SUGP1
SURP and G-patch domain containing 1.
     
  0.962
htatsf1
HIV-1 Tat specific factor 1.
     
 0.961
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
   
 
 0.957
TCERG1
Transcription elongation regulator 1.
   
 
  0.954
sf3b2
Splicing factor 3b, subunit 2.
   
   0.921
sf3a1
Splicing factor 3a, subunit 1.
   
   0.911
sf3b1
Splicing factor 3b, subunit 1.
   
   0.900
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
   0.883
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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