STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd27Ankyrin repeat domain 27 (VPS9 domain). (1081 aa)    
Predicted Functional Partners:
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
    
 0.960
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 
 0.944
LOC110954040
Si:ch73-234b20.5.
    
 0.935
rab21
RAB21, member RAS oncogene family.
   
 0.919
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.896
LOC110956699
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.896
eif2b2
Eukaryotic translation initiation factor 2B, subunit 2 beta; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
   0.760
rps27a
Ribosomal protein S27a.
    
  0.740
ENSAPOP00000003675
Ubiquitin-like domain-containing protein.
    
 0.737
rab20
RAB20, member RAS oncogene family.
    
 0.728
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
Server load: low (24%) [HD]