LOC110948835 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110948835

Uncharacterized protein. (455 aa)

Predicted Functional Partners:

NRTN

0.800

gdnf

0.773

ret

0.715

ENSAPOP00000027255

0.694

LOC110955617

0.694

PSPN

0.628

LOC110952165

0.588

pdgfrl

0.588

LOC110954597

0.561

FGFRL1

0.561

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000027255	FGFRL1	ENSAPOP00000027255	ENSAPOP00000012057	Artemin a.	Fibroblast growth factor receptor like 1.	0.657
ENSAPOP00000027255	LOC110948835	ENSAPOP00000027255	ENSAPOP00000004638	Artemin a.	Uncharacterized protein.	0.694
ENSAPOP00000027255	LOC110952165	ENSAPOP00000027255	ENSAPOP00000013913	Artemin a.	Uncharacterized protein.	0.656
ENSAPOP00000027255	LOC110954597	ENSAPOP00000027255	ENSAPOP00000006224	Artemin a.	Fibroblast growth factor receptor like 1a.	0.657
ENSAPOP00000027255	NRTN	ENSAPOP00000027255	ENSAPOP00000002191	Artemin a.	Neurturin.	0.503
ENSAPOP00000027255	gdnf	ENSAPOP00000027255	ENSAPOP00000028251	Artemin a.	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	0.442
ENSAPOP00000027255	pdgfrl	ENSAPOP00000027255	ENSAPOP00000033261	Artemin a.	Platelet-derived growth factor receptor-like.	0.656
ENSAPOP00000027255	ret	ENSAPOP00000027255	ENSAPOP00000029334	Artemin a.	Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.	0.950
FGFRL1	ENSAPOP00000027255	ENSAPOP00000012057	ENSAPOP00000027255	Fibroblast growth factor receptor like 1.	Artemin a.	0.657
FGFRL1	LOC110948835	ENSAPOP00000012057	ENSAPOP00000004638	Fibroblast growth factor receptor like 1.	Uncharacterized protein.	0.561
FGFRL1	LOC110952165	ENSAPOP00000012057	ENSAPOP00000013913	Fibroblast growth factor receptor like 1.	Uncharacterized protein.	0.531
FGFRL1	LOC110955617	ENSAPOP00000012057	ENSAPOP00000029580	Fibroblast growth factor receptor like 1.	TGF_BETA_2 domain-containing protein.	0.657
FGFRL1	NRTN	ENSAPOP00000012057	ENSAPOP00000002191	Fibroblast growth factor receptor like 1.	Neurturin.	0.827
FGFRL1	PSPN	ENSAPOP00000012057	ENSAPOP00000022700	Fibroblast growth factor receptor like 1.	Persephin.	0.732
FGFRL1	gdnf	ENSAPOP00000012057	ENSAPOP00000028251	Fibroblast growth factor receptor like 1.	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	0.843
FGFRL1	pdgfrl	ENSAPOP00000012057	ENSAPOP00000033261	Fibroblast growth factor receptor like 1.	Platelet-derived growth factor receptor-like.	0.531
LOC110948835	ENSAPOP00000027255	ENSAPOP00000004638	ENSAPOP00000027255	Uncharacterized protein.	Artemin a.	0.694
LOC110948835	FGFRL1	ENSAPOP00000004638	ENSAPOP00000012057	Uncharacterized protein.	Fibroblast growth factor receptor like 1.	0.561
LOC110948835	LOC110952165	ENSAPOP00000004638	ENSAPOP00000013913	Uncharacterized protein.	Uncharacterized protein.	0.588
LOC110948835	LOC110954597	ENSAPOP00000004638	ENSAPOP00000006224	Uncharacterized protein.	Fibroblast growth factor receptor like 1a.	0.561