LOC110952899 protein (Acanthochromis polyacanthus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

LOC110952899

Uncharacterized protein. (786 aa)

Predicted Functional Partners:

abl2

0.756

abl1

0.756

rabgef1

0.703

LOC110952718

0.703

LOC110960074

0.703

rab20

0.615

RAB31

0.615

LOC110966087

0.615

LOC110949572

0.615

LOC110961874

0.615

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110949572	LOC110952718	ENSAPOP00000017139	ENSAPOP00000010472	Uncharacterized protein.	Uncharacterized protein.	0.981
LOC110949572	LOC110952899	ENSAPOP00000017139	ENSAPOP00000004696	Uncharacterized protein.	Uncharacterized protein.	0.615
LOC110949572	LOC110960074	ENSAPOP00000017139	ENSAPOP00000019535	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.981
LOC110949572	LOC110961874	ENSAPOP00000017139	ENSAPOP00000018089	Uncharacterized protein.	RAB5A, member RAS oncogene family, a.	0.716
LOC110949572	RAB31	ENSAPOP00000017139	ENSAPOP00000013391	Uncharacterized protein.	RAB31, member RAS oncogene family.	0.440
LOC110949572	rabgef1	ENSAPOP00000017139	ENSAPOP00000000966	Uncharacterized protein.	Uncharacterized protein.	0.981
LOC110952718	LOC110949572	ENSAPOP00000010472	ENSAPOP00000017139	Uncharacterized protein.	Uncharacterized protein.	0.981
LOC110952718	LOC110952899	ENSAPOP00000010472	ENSAPOP00000004696	Uncharacterized protein.	Uncharacterized protein.	0.703
LOC110952718	LOC110960074	ENSAPOP00000010472	ENSAPOP00000019535	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.883
LOC110952718	LOC110961874	ENSAPOP00000010472	ENSAPOP00000018089	Uncharacterized protein.	RAB5A, member RAS oncogene family, a.	0.981
LOC110952718	LOC110966087	ENSAPOP00000010472	ENSAPOP00000016985	Uncharacterized protein.	Uncharacterized protein.	0.969
LOC110952718	RAB31	ENSAPOP00000010472	ENSAPOP00000013391	Uncharacterized protein.	RAB31, member RAS oncogene family.	0.969
LOC110952718	rab20	ENSAPOP00000010472	ENSAPOP00000001197	Uncharacterized protein.	RAB20, member RAS oncogene family.	0.969
LOC110952718	rabgef1	ENSAPOP00000010472	ENSAPOP00000000966	Uncharacterized protein.	Uncharacterized protein.	0.883
LOC110952899	LOC110949572	ENSAPOP00000004696	ENSAPOP00000017139	Uncharacterized protein.	Uncharacterized protein.	0.615
LOC110952899	LOC110952718	ENSAPOP00000004696	ENSAPOP00000010472	Uncharacterized protein.	Uncharacterized protein.	0.703
LOC110952899	LOC110960074	ENSAPOP00000004696	ENSAPOP00000019535	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.703
LOC110952899	LOC110961874	ENSAPOP00000004696	ENSAPOP00000018089	Uncharacterized protein.	RAB5A, member RAS oncogene family, a.	0.615
LOC110952899	LOC110966087	ENSAPOP00000004696	ENSAPOP00000016985	Uncharacterized protein.	Uncharacterized protein.	0.615
LOC110952899	RAB31	ENSAPOP00000004696	ENSAPOP00000013391	Uncharacterized protein.	RAB31, member RAS oncogene family.	0.615