LOC110970682 protein (Acanthochromis polyacanthus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC110970682

Ras and Rab interactor 2. (1114 aa)

Predicted Functional Partners:

exo1

0.883

LOC110949572

0.775

LOC110961874

0.775

LOC110952764

0.775

LOC110961427

0.775

LOC110950836

0.775

LOC110971693

0.775

abl2

0.756

abl1

0.756

rabgef1

0.703

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110949572	LOC110950836	ENSAPOP00000017139	ENSAPOP00000031932	Uncharacterized protein.	RAB5A, member RAS oncogene family, b.	0.716
LOC110949572	LOC110961427	ENSAPOP00000017139	ENSAPOP00000030361	Uncharacterized protein.	RAB5C, member RAS oncogene family.	0.710
LOC110949572	LOC110961874	ENSAPOP00000017139	ENSAPOP00000018089	Uncharacterized protein.	RAB5A, member RAS oncogene family, a.	0.716
LOC110949572	LOC110970682	ENSAPOP00000017139	ENSAPOP00000004699	Uncharacterized protein.	Ras and Rab interactor 2.	0.775
LOC110949572	rabgef1	ENSAPOP00000017139	ENSAPOP00000000966	Uncharacterized protein.	Uncharacterized protein.	0.981
LOC110950836	LOC110949572	ENSAPOP00000031932	ENSAPOP00000017139	RAB5A, member RAS oncogene family, b.	Uncharacterized protein.	0.716
LOC110950836	LOC110961427	ENSAPOP00000031932	ENSAPOP00000030361	RAB5A, member RAS oncogene family, b.	RAB5C, member RAS oncogene family.	0.853
LOC110950836	LOC110970682	ENSAPOP00000031932	ENSAPOP00000004699	RAB5A, member RAS oncogene family, b.	Ras and Rab interactor 2.	0.775
LOC110950836	LOC110971693	ENSAPOP00000031932	ENSAPOP00000033265	RAB5A, member RAS oncogene family, b.	RAB5B, member RAS oncogene family.	0.849
LOC110950836	rabgef1	ENSAPOP00000031932	ENSAPOP00000000966	RAB5A, member RAS oncogene family, b.	Uncharacterized protein.	0.981
LOC110952764	LOC110970682	ENSAPOP00000027075	ENSAPOP00000004699	Uncharacterized protein.	Ras and Rab interactor 2.	0.775
LOC110952764	rabgef1	ENSAPOP00000027075	ENSAPOP00000000966	Uncharacterized protein.	Uncharacterized protein.	0.969
LOC110961427	LOC110949572	ENSAPOP00000030361	ENSAPOP00000017139	RAB5C, member RAS oncogene family.	Uncharacterized protein.	0.710
LOC110961427	LOC110950836	ENSAPOP00000030361	ENSAPOP00000031932	RAB5C, member RAS oncogene family.	RAB5A, member RAS oncogene family, b.	0.853
LOC110961427	LOC110961874	ENSAPOP00000030361	ENSAPOP00000018089	RAB5C, member RAS oncogene family.	RAB5A, member RAS oncogene family, a.	0.853
LOC110961427	LOC110970682	ENSAPOP00000030361	ENSAPOP00000004699	RAB5C, member RAS oncogene family.	Ras and Rab interactor 2.	0.775
LOC110961427	LOC110971693	ENSAPOP00000030361	ENSAPOP00000033265	RAB5C, member RAS oncogene family.	RAB5B, member RAS oncogene family.	0.860
LOC110961427	rabgef1	ENSAPOP00000030361	ENSAPOP00000000966	RAB5C, member RAS oncogene family.	Uncharacterized protein.	0.981
LOC110961874	LOC110949572	ENSAPOP00000018089	ENSAPOP00000017139	RAB5A, member RAS oncogene family, a.	Uncharacterized protein.	0.716
LOC110961874	LOC110961427	ENSAPOP00000018089	ENSAPOP00000030361	RAB5A, member RAS oncogene family, a.	RAB5C, member RAS oncogene family.	0.853