LOC110956359 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110956359

Extended synaptotagmin-like protein 3. (794 aa)

Predicted Functional Partners:

LOC110946601

0.854

ENSAPOP00000024610

0.853

ENSAPOP00000028898

0.853

pla2g7

0.670

LOC110962383

0.656

pla2g6

0.655

pisd

0.653

slc12a8

0.653

LOC110958887

0.650

pemt

0.639

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000024610	ENSAPOP00000028898	ENSAPOP00000024610	ENSAPOP00000028898	Uncharacterized protein.	Uncharacterized protein.	0.943
ENSAPOP00000024610	LOC110956359	ENSAPOP00000024610	ENSAPOP00000004822	Uncharacterized protein.	Extended synaptotagmin-like protein 3.	0.853
ENSAPOP00000028898	ENSAPOP00000024610	ENSAPOP00000028898	ENSAPOP00000024610	Uncharacterized protein.	Uncharacterized protein.	0.943
ENSAPOP00000028898	LOC110956359	ENSAPOP00000028898	ENSAPOP00000004822	Uncharacterized protein.	Extended synaptotagmin-like protein 3.	0.853
LOC110946601	LOC110956359	ENSAPOP00000002326	ENSAPOP00000004822	Ubiquitin-conjugating enzyme E2 variant 1.	Extended synaptotagmin-like protein 3.	0.854
LOC110946601	pla2g6	ENSAPOP00000002326	ENSAPOP00000010865	Ubiquitin-conjugating enzyme E2 variant 1.	Phospholipase A2, group VI (cytosolic, calcium-independent).	0.873
LOC110956359	ENSAPOP00000024610	ENSAPOP00000004822	ENSAPOP00000024610	Extended synaptotagmin-like protein 3.	Uncharacterized protein.	0.853
LOC110956359	ENSAPOP00000028898	ENSAPOP00000004822	ENSAPOP00000028898	Extended synaptotagmin-like protein 3.	Uncharacterized protein.	0.853
LOC110956359	LOC110946601	ENSAPOP00000004822	ENSAPOP00000002326	Extended synaptotagmin-like protein 3.	Ubiquitin-conjugating enzyme E2 variant 1.	0.854
LOC110956359	LOC110958887	ENSAPOP00000004822	ENSAPOP00000033364	Extended synaptotagmin-like protein 3.	C2 domain-containing protein.	0.650
LOC110956359	LOC110962383	ENSAPOP00000004822	ENSAPOP00000015410	Extended synaptotagmin-like protein 3.	Biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino.	0.656
LOC110956359	pemt	ENSAPOP00000004822	ENSAPOP00000005576	Extended synaptotagmin-like protein 3.	Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family.	0.639
LOC110956359	pisd	ENSAPOP00000004822	ENSAPOP00000011488	Extended synaptotagmin-like protein 3.	Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine.	0.653
LOC110956359	pla2g6	ENSAPOP00000004822	ENSAPOP00000010865	Extended synaptotagmin-like protein 3.	Phospholipase A2, group VI (cytosolic, calcium-independent).	0.655
LOC110956359	pla2g7	ENSAPOP00000004822	ENSAPOP00000034519	Extended synaptotagmin-like protein 3.	Platelet-activating factor acetylhydrolase.	0.670
LOC110956359	slc12a8	ENSAPOP00000004822	ENSAPOP00000024583	Extended synaptotagmin-like protein 3.	Solute carrier family 12 member 8.	0.653
LOC110958887	LOC110956359	ENSAPOP00000033364	ENSAPOP00000004822	C2 domain-containing protein.	Extended synaptotagmin-like protein 3.	0.650
LOC110962383	LOC110956359	ENSAPOP00000015410	ENSAPOP00000004822	Biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino.	Extended synaptotagmin-like protein 3.	0.656
pemt	LOC110956359	ENSAPOP00000005576	ENSAPOP00000004822	Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family.	Extended synaptotagmin-like protein 3.	0.639
pemt	pisd	ENSAPOP00000005576	ENSAPOP00000011488	Phosphatidylethanolamine N-methyltransferase; Catalyzes the three sequential steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylethanolamine (PE) to phosphatidylmonomethylethanolamine (PMME), PMME to phosphatidyldimethylethanolamine (PDME), and PDME to phosphatidylcholine (PC); Belongs to the class VI-like SAM-binding methyltransferase superfamily. PEMT/PEM2 methyltransferase family.	Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine.	0.959