Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC110956357Poly [ADP-ribose] polymerase. (1732 aa)    
Predicted Functional Partners:
LOC110955907
Si:dkey-3h3.3.
   
 
 0.925
LOC110958604
RING-type domain-containing protein.
   
 
 0.925
ENSAPOP00000028438
RING-type domain-containing protein.
   
 
 0.925
ifih1
Interferon induced with helicase C domain 1.
   
 
 0.871
ube2z
Ubiquitin-conjugating enzyme E2Z.
   
   0.857
LOC110958603
Zgc:66440.
   
 
 0.845
helz2
RNB domain-containing protein.
  
 
 0.781
ENSAPOP00000033864
Uncharacterized protein.
   
  
 0.756
parp3
Poly [ADP-ribose] polymerase.
    
 
 0.755
parp2
Poly [ADP-ribose] polymerase.
    
 
 0.738
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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