ENSAPOP00000004928 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSAPOP00000004928

Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (192 aa)

Predicted Functional Partners:

ENSAPOP00000021704

0.890

LOC110958170

0.870

tln2

0.866

LOC110961362

0.866

LOC110963287

0.866

CAPNS1

0.866

bax

0.848

LOC110962959

0.848

LOC110952403

0.847

ENSAPOP00000015126

0.845

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAPNS1	ENSAPOP00000004928	ENSAPOP00000032530	ENSAPOP00000004928	Calpain small subunit 1.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.866
CAPNS1	ENSAPOP00000021704	ENSAPOP00000032530	ENSAPOP00000021704	Calpain small subunit 1.	Uncharacterized protein.	0.986
CAPNS1	LOC110958170	ENSAPOP00000032530	ENSAPOP00000000953	Calpain small subunit 1.	Calpain, small subunit 1 b.	0.544
ENSAPOP00000004928	CAPNS1	ENSAPOP00000004928	ENSAPOP00000032530	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Calpain small subunit 1.	0.866
ENSAPOP00000004928	ENSAPOP00000015126	ENSAPOP00000004928	ENSAPOP00000015126	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	BH3 interacting domain death agonist.	0.845
ENSAPOP00000004928	ENSAPOP00000021704	ENSAPOP00000004928	ENSAPOP00000021704	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.890
ENSAPOP00000004928	LOC110952403	ENSAPOP00000004928	ENSAPOP00000000203	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.847
ENSAPOP00000004928	LOC110958170	ENSAPOP00000004928	ENSAPOP00000000953	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Calpain, small subunit 1 b.	0.870
ENSAPOP00000004928	LOC110961362	ENSAPOP00000004928	ENSAPOP00000004935	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Talin 2a.	0.866
ENSAPOP00000004928	LOC110962959	ENSAPOP00000004928	ENSAPOP00000021381	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Zgc:153993.	0.848
ENSAPOP00000004928	LOC110963287	ENSAPOP00000004928	ENSAPOP00000028105	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Talin 1.	0.866
ENSAPOP00000004928	bax	ENSAPOP00000004928	ENSAPOP00000020432	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	BCL2 associated X, apoptosis regulator a.	0.848
ENSAPOP00000004928	tln2	ENSAPOP00000004928	ENSAPOP00000004194	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Talin 2b.	0.866
ENSAPOP00000015126	ENSAPOP00000004928	ENSAPOP00000015126	ENSAPOP00000004928	BH3 interacting domain death agonist.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.845
ENSAPOP00000015126	LOC110952403	ENSAPOP00000015126	ENSAPOP00000000203	BH3 interacting domain death agonist.	Uncharacterized protein.	0.883
ENSAPOP00000015126	LOC110962959	ENSAPOP00000015126	ENSAPOP00000021381	BH3 interacting domain death agonist.	Zgc:153993.	0.880
ENSAPOP00000015126	bax	ENSAPOP00000015126	ENSAPOP00000020432	BH3 interacting domain death agonist.	BCL2 associated X, apoptosis regulator a.	0.883
ENSAPOP00000021704	CAPNS1	ENSAPOP00000021704	ENSAPOP00000032530	Uncharacterized protein.	Calpain small subunit 1.	0.986
ENSAPOP00000021704	ENSAPOP00000004928	ENSAPOP00000021704	ENSAPOP00000004928	Uncharacterized protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.890
ENSAPOP00000021704	LOC110958170	ENSAPOP00000021704	ENSAPOP00000000953	Uncharacterized protein.	Calpain, small subunit 1 b.	0.986