Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110954021Fin bud initiation factor b. (206 aa)    
Predicted Functional Partners:
LOC110956439
Fibromodulin b.
   
    0.855
LOC110953337
Fibromodulin a.
   
    0.855
ucma
Upper zone of growth plate and cartilage matrix associated b.
      
 0.825
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.771
ush1c
Usher syndrome 1C.
      
 0.700
cd81
Tetraspanin.
      
 0.671
LOC110961812
Tetraspanin.
      
 0.671
LOC110967711
C2 domain-containing protein.
      
 0.655
CPNE8
Copine 8.
      
 0.655
LOC110948146
Uncharacterized protein.
      
 0.649
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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