LOC110961666 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110961666

Si:ch211-131k2.3. (158 aa)

Predicted Functional Partners:

aarsd1

0.975

ppp5c

0.946

aars2

0.941

aars1

0.941

ENSAPOP00000011143

0.918

ppid

0.918

PPIG

0.918

nktr

0.918

tbcb

0.902

ptges2

0.894

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000011143	LOC110961666	ENSAPOP00000011143	ENSAPOP00000005071	PPIase cyclophilin-type domain-containing protein.	Si:ch211-131k2.3.	0.918
ENSAPOP00000011143	ppp5c	ENSAPOP00000011143	ENSAPOP00000011460	PPIase cyclophilin-type domain-containing protein.	Serine/threonine-protein phosphatase.	0.697
LOC110961666	ENSAPOP00000011143	ENSAPOP00000005071	ENSAPOP00000011143	Si:ch211-131k2.3.	PPIase cyclophilin-type domain-containing protein.	0.918
LOC110961666	PPIG	ENSAPOP00000005071	ENSAPOP00000022294	Si:ch211-131k2.3.	Peptidylprolyl isomerase G.	0.918
LOC110961666	aars1	ENSAPOP00000005071	ENSAPOP00000018987	Si:ch211-131k2.3.	Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.	0.941
LOC110961666	aars2	ENSAPOP00000005071	ENSAPOP00000013856	Si:ch211-131k2.3.	Alanyl-tRNA synthetase 2, mitochondrial (putative); Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.	0.941
LOC110961666	aarsd1	ENSAPOP00000005071	ENSAPOP00000024356	Si:ch211-131k2.3.	Alanyl-tRNA synthetase domain containing 1.	0.975
LOC110961666	nktr	ENSAPOP00000005071	ENSAPOP00000032357	Si:ch211-131k2.3.	Natural killer cell triggering receptor.	0.918
LOC110961666	ppid	ENSAPOP00000005071	ENSAPOP00000018342	Si:ch211-131k2.3.	Peptidylprolyl isomerase D.	0.918
LOC110961666	ppp5c	ENSAPOP00000005071	ENSAPOP00000011460	Si:ch211-131k2.3.	Serine/threonine-protein phosphatase.	0.946
LOC110961666	ptges2	ENSAPOP00000005071	ENSAPOP00000032260	Si:ch211-131k2.3.	Prostaglandin E synthase 2-like; Belongs to the GST superfamily.	0.894
LOC110961666	tbcb	ENSAPOP00000005071	ENSAPOP00000013958	Si:ch211-131k2.3.	Tubulin folding cofactor B.	0.902
PPIG	LOC110961666	ENSAPOP00000022294	ENSAPOP00000005071	Peptidylprolyl isomerase G.	Si:ch211-131k2.3.	0.918
PPIG	ppp5c	ENSAPOP00000022294	ENSAPOP00000011460	Peptidylprolyl isomerase G.	Serine/threonine-protein phosphatase.	0.579
aars1	LOC110961666	ENSAPOP00000018987	ENSAPOP00000005071	Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.	Si:ch211-131k2.3.	0.941
aars1	aars2	ENSAPOP00000018987	ENSAPOP00000013856	Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.	Alanyl-tRNA synthetase 2, mitochondrial (putative); Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.	0.873
aars1	aarsd1	ENSAPOP00000018987	ENSAPOP00000024356	Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.	Alanyl-tRNA synthetase domain containing 1.	0.889
aars2	LOC110961666	ENSAPOP00000013856	ENSAPOP00000005071	Alanyl-tRNA synthetase 2, mitochondrial (putative); Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.	Si:ch211-131k2.3.	0.941
aars2	aars1	ENSAPOP00000013856	ENSAPOP00000018987	Alanyl-tRNA synthetase 2, mitochondrial (putative); Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.	Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.	0.873
aars2	aarsd1	ENSAPOP00000013856	ENSAPOP00000024356	Alanyl-tRNA synthetase 2, mitochondrial (putative); Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.	Alanyl-tRNA synthetase domain containing 1.	0.889