Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
LOC110954652Rho GTPase activating protein 4a. (762 aa)    
Predicted Functional Partners:
ENSAPOP00000030863
Intersectin 2a.
   
 0.828
LOC110950796
Intersectin 2b.
   
 0.828
itsn1
Intersectin 1 (SH3 domain protein).
   
 0.684
nckipsd
NCK interacting protein with SH3 domain.
    
 
 0.624
ENSAPOP00000016241
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
    
   0.570
was
WASP actin nucleation promoting factor a.
   
 0.568
ENSAPOP00000018232
WH1 domain-containing protein.
   
 0.568
wasl
WASP like actin nucleation promoting factor b.
   
 0.568
LOC110954125
Growth arrest-specific 7a.
    
 0.567
LOC110952986
Growth arrest specific 7.
    
 0.567
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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